SMTL ID : 2gfi.1

Crystal structure of the phytase from D. castellii at 2.3 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 8 residues within 4Å: Chain A: V.304, S.307, T.308, N.311, V.423, T.426, N.427, Y.428 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.304, A:T.308 Hydrogen bonds: A:N.311, A:T.426, A:T.426, A:T.426 Water bridges: A:T.426 NAG.2: 6 residues within 4Å: Chain A: A.198, D.199, F.212, N.434, N.435, N.436 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.435 Hydrogen bonds: A:N.435 Water bridges: A:D.199 NAG.3: 7 residues within 4Å: Chain B: V.304, S.307, T.308, N.311, V.423, T.426, Y.428 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.304, B:T.308, B:Y.428 Hydrogen bonds: B:N.311, B:T.426, B:T.426 NAG.4: 5 residues within 4Å: Chain B: D.199, F.212, N.434, N.435, N.436 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:N.435 Hydrogen bonds: B:N.435 Water bridges: B:N.436 NAG.5: 1 residues within 4Å: Chain B: N.155 No protein-ligand interaction detected (PLIP) NAG.6: 8 residues within 4Å: Chain C: V.304, S.307, T.308, N.311, V.423, T.426, N.427, Y.428 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:V.304, C:T.308 Hydrogen bonds: C:N.311, C:T.426, C:T.426 Water bridges: C:T.426 NAG.7: 6 residues within 4Å: Chain C: A.198, D.199, F.212, N.434, N.435, N.436 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:N.435 Hydrogen bonds: C:N.435 Water bridges: C:D.199 NAG.8: 7 residues within 4Å: Chain D: V.304, S.307, T.308, N.311, V.423, T.426, Y.428 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:V.304, D:T.308, D:Y.428 Hydrogen bonds: D:N.311, D:T.426, D:T.426, D:T.426 NAG.9: 5 residues within 4Å: Chain D: D.199, F.212, N.434, N.435, N.436 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:N.435 Hydrogen bonds: D:N.435 Water bridges: D:N.436 NAG.10: 1 residues within 4Å: Chain D: N.155 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ragon, M. et al., Structure of Debaryomyces castellii CBS 2923 phytase. Acta Crystallogr.,Sect.F (2009)

Release Date

2007-03-27

Peptides

phytase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

phytase