SMTL ID : 2q2l.1

Crystal Structure of Superoxide Dismutase from P. atrosanguina

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.62, H.70, H.79, D.82 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.62, A:H.70, A:H.79, A:D.82, A:D.82 ZN.8: 5 residues within 4Å: Chain B: H.62, H.70, H.79, D.82, S.135 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.62, B:H.70, B:H.79, B:D.82, B:D.82

10 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: N.54, S.58 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: F.63, N.64, P.65 Ligand excluded by PLIP IOD.4: 4 residues within 4Å: Chain A: S.10, S.11, R.142, I.143 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: F.96, T.97 Chain B: H.130 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: A.48, P.61 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: C.56, M.57, R.142 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: L.19 Chain B: N.54, S.58 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain B: N.64, P.65 Ligand excluded by PLIP IOD.11: 1 residues within 4Å: Chain B: D.91 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain B: L.49, P.61 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yogavel, M. et al., SAD phasing of a structure based on cocrystallized iodides using an in-house Cu Kalpha X-ray source: effects of data redundancy and completeness on structure solution. Acta Crystallogr.,Sect.D (2007)

Release Date

2008-03-25

Peptides

Superoxide Dismutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Superoxide Dismutase