- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-18-1-1-mer
- Ligands
- 2 x U- U- U- U: RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3')(Non-covalent)
- 7 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 10 residues within 4Å:- Chain A: N.115, N.117
- Chain B: N.115, N.117
- Chain C: N.115, N.117
- Chain D: N.115, N.117
- Chain E: N.115, N.117
10 PLIP interactions:2 interactions with chain D, 2 interactions with chain B, 2 interactions with chain E, 2 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: D:N.115, D:N.117, B:N.115, B:N.117, E:N.115, E:N.117, A:N.115, A:N.117, C:N.115, C:N.117
PO4.8: 9 residues within 4Å:- Chain F: N.115, N.117
- Chain G: N.115, N.117
- Chain H: N.115, N.117
- Chain I: N.115, N.117
- Chain J: N.117
9 PLIP interactions:2 interactions with chain F, 1 interactions with chain J, 2 interactions with chain H, 2 interactions with chain I, 2 interactions with chain G- Hydrogen bonds: F:N.115, F:N.117, J:N.117, H:N.115, H:N.117, I:N.115, I:N.115, G:N.115, G:N.117
PO4.10: 4 residues within 4Å:- Chain H: R.66, T.67, D.68, S.69
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:D.68, H:D.68, H:S.69
PO4.11: 10 residues within 4Å:- Chain K: N.115, N.117
- Chain L: N.115, N.117
- Chain M: N.115, N.117
- Chain N: N.115, N.117
- Chain O: N.115, N.117
11 PLIP interactions:2 interactions with chain L, 2 interactions with chain K, 2 interactions with chain O, 3 interactions with chain M, 2 interactions with chain N- Hydrogen bonds: L:N.115, L:N.117, K:N.115, K:N.117, O:N.115, O:N.117, M:N.115, M:N.115, M:N.117, N:N.115, N:N.117
PO4.15: 3 residues within 4Å:- Chain 2: R.79, S.155
- Chain Q: A.5
4 PLIP interactions:4 interactions with chain 2- Hydrogen bonds: 2:S.155, 2:S.155
- Water bridges: 2:R.79
- Salt bridges: 2:R.79
PO4.17: 9 residues within 4Å:- Chain 0: N.115, N.117
- Chain 1: N.115, N.117
- Chain 2: N.115, N.117
- Chain 3: N.115, N.117
- Chain 4: N.117
12 PLIP interactions:3 interactions with chain 0, 2 interactions with chain 1, 2 interactions with chain 4, 3 interactions with chain 3, 2 interactions with chain 2- Hydrogen bonds: 0:N.115, 0:N.115, 0:N.117, 1:N.115, 1:N.117, 4:N.115, 4:N.117, 3:N.115, 3:N.115, 3:N.117, 2:N.115, 2:N.117
PO4.28: 1 residues within 4Å:- Chain a: U.1
No protein-ligand interaction detected (PLIP)- 15 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.5: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.7: 7 residues within 4Å:- Chain 1: Y.28
- Chain G: P.42, F.43, E.44, A.151, L.152
- Chain H: R.112
Ligand excluded by PLIPCL.13: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.14: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.16: 3 residues within 4Å:- Chain F: V.38
- Chain R: A.4, A.5
Ligand excluded by PLIPCL.18: 7 residues within 4Å:- Chain 1: F.70, T.71, S.72, N.159
- Chain H: D.104, S.105, T.106
Ligand excluded by PLIPCL.22: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.23: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.24: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.25: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.26: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.27: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.29: 1 residues within 4Å:- Ligands: U-U-U-U.2
Ligand excluded by PLIPCL.30: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- 6 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.6: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.9: 6 residues within 4Å:- Chain H: P.86, S.92, A.113, N.115, I.116, T.118
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:S.92, H:I.116, H:T.118
MG.12: 7 residues within 4Å:- Chain L: T.82, L.84, S.92, T.118, R.119, C.147
- Chain M: Y.91
3 PLIP interactions:1 interactions with chain M, 2 interactions with chain L- Metal complexes: M:Y.91, L:T.82, L:S.92
MG.19: 4 residues within 4Å:- Chain 2: T.82, Q.83, L.84
- Chain 3: Y.91
3 PLIP interactions:2 interactions with chain 2, 1 Ligand-Water interactions- Metal complexes: 2:T.82, 2:L.84, H2O.34
MG.20: 2 residues within 4Å:- Chain 3: T.118
- Chain 4: N.115
1 PLIP interactions:1 interactions with chain 3- Metal complexes: 3:T.118
MG.21: 5 residues within 4Å:- Chain 3: T.82, L.84, S.92, C.147
- Chain 4: Y.91
4 PLIP interactions:3 interactions with chain 3, 1 interactions with chain 4- Metal complexes: 3:T.82, 3:L.84, 3:S.92, 4:Y.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson, A., Structures of additional crystal forms of Satellite tobacco mosaic virus grown from a variety of salts. Acta Crystallogr.,Sect.F (2021)
- Release Date
- 2021-12-15
- Peptides
- Coat protein: ABCDEFHIJKLMO01234
Coat protein: G
Coat protein: N - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FH
HI
IJ
JK
KL
LM
MO
O0
GG1
HH2
II3
JJ4
KKG
GN
N
SMTL ID : 7m3t.1
Crystallographic structure of a cubic crystal of STMV (80.7 degree rotation about 111) grown from chloride
Coat protein
Toggle Identical (ADEFIJM0134) Toggle Identical (B2)Coat protein
Coat protein
Related Entries With Identical Sequence
1a34.1 | 1a34.2 | 1a34.3 | 1a34.4 | 1a34.5 | 4nia.1 | 4oq8.1 | 4oq8.2 | 4oq8.3 | 4oq8.4 | 4oq8.5 | 4oq9.1 | 4oq9.2 | 4oq9.3 | 5bkl.1 | 5bkn.1 | 5bkq.1 | 7m2t.1 | 7m2t.2 | 7m2t.3 | 7m2t.4 | 7m2t.5 | 7m2t.6 | 7m2t.7 | 7m2t.8 | 7m2t.9 | 7m2t.10 | 7m2t.11 | 7m2t.12 | 7m2t.13 more...less...7m2t.14 | 7m2t.15 | 7m2t.16 | 7m2t.17 | 7m2t.18 | 7m2t.19 | 7m2t.20 | 7m2t.21 | 7m2t.22 | 7m2t.23 | 7m2t.24 | 7m2t.25 | 7m2t.26 | 7m2t.27 | 7m2t.28 | 7m2t.29 | 7m2t.30 | 7m2v.1 | 7m3r.1 | 7m50.1 | 7m54.1 | 7m57.1 | 7m57.2 | 7m57.3 | 7m57.4 | 7m57.5 | 7m57.6 | 7m57.7 | 7m57.8 | 7m57.9 | 7m57.10 | 7m57.11 | 7m57.12 | 7m57.13 | 7m57.14 | 7m57.15 | 7m57.16 | 7m57.17 | 7m57.18 | 7m57.19 | 7m57.20 | 7m57.21 | 7m57.22 | 7m57.23 | 7m57.24 | 7m57.25 | 7m57.26 | 7m57.27 | 7m57.28 | 7m57.29 | 7m57.30