UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q10926 (YWR2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein B0302.2; | |
Q9N3X8 (SDK_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein sidekick homolog; Neuronal IgCAM protein 4; | |
G5EGQ6 (TEN1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Teneurin-1; | |
Q17551 (RPM1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | E3 ubiquitin-protein ligase rpm-1; Pam/highwire/rpm-1 protein; Regulator of presynaptic morphology protein 1; Synapse defective protein 3; | |
Q10927 (YWR4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein B0302.4; | |
P34576 (MUA3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Transmembrane cell adhesion receptor mua-3; Muscle attachment abnormal protein 3; | |
Q9TZM3 (LRK1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Leucine-rich repeat serine/threonine-protein kinase 1; Leucine-rich repeats, ras-like domain, kinase protein 1; PARK8-related kinase; | |
Q9TW65 (DMD_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Dystrophin-1; | |
Q21313 (EPI1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Laminin-like protein epi-1; Laminin alphaB; Laminin subunit alpha epi-1; | |
Q95Q95 (TOR_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Target of rapamycin homolog; CeTOR; Lethal protein 363; | |
P34616 (CADH3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cadherin-3; | |
Q09624 (PKD1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Location of vulva defective 1; Polycystic kidney disease 1 protein homolog; Polycystin-1; | |
Q06561 (UNC52_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Basement membrane proteoglycan; Perlecan homolog; Uncoordinated protein 52; | |
Q19319 (CADH4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cadherin-4; | |
Q21920 (ANKHM_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Ankyrin repeat and KH domain-containing protein mask-1; Multiple ankyrin repeats single KH domain homolog; | |
Q09221 (CPNA2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Copine family protein 2; | |
Q20911 (CUBN_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cubilin homolog; | |
Q04833 (LRP_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Low-density lipoprotein receptor-related protein; | |
V6CLP5 (KETN1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Kettin homolog; | |
Q23551 (UNC22_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Twitchin; Uncoordinated protein 22; | |
G5EEV2 (TRR1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Transcription-associated protein 1; | |
Q19542 (DYHC2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cytoplasmic dynein 2 heavy chain 1; Abnormal chemotaxis protein 3; | |
O01761 (UNC89_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Muscle M-line assembly protein unc-89; Inactive serine/threonine-protein kinase unc-89; Obscurin; Uncoordinated protein 89; | |
Q18685 (UN112_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein unc-112; Mitogen-inducible mig-2 protein-like; Uncoordinated protein 112; | |
Q09298 (PINK1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serine/threonine-protein kinase pink-1, mitochondrial; PTEN-induced kinase 1 homolog; | |
Q21629 (EGG2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | LDL receptor repeat-containing protein egg-2; Egg sterile protein 2; | |
P05690 (VIT2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Vitellogenin-2; | |
Q9N4H4 (PARP1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Poly [ADP-ribose] polymerase 1; Poly ADP-ribose metabolism enzyme 1; Protein poly-ADP-ribosyltransferase parp-1; | |
P56174 (ILB5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable insulin-like peptide beta-type 5; | |
O16850 (FOXO_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Forkhead box protein O; Abnormal dauer formation protein 16; | |
Q9XXR3 (HMT11_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Proton myo-inositol cotransporter hmit-1.1; H(+)-myo-inositol symporter hmit-1.1; | |
P38433 (ACE1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholinesterase 1; | |
Q7YTU4 (ERO1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Endoplasmic reticulum oxidoreductin-1; | |
Q86DA5 (SARM1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | NAD(+) hydrolase tir-1; Neuronal symmetry protein 2; SARM1 homolog; Sterile alpha and TIR motif-containing protein tir-1; | |
P34885 (KPC1B_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein kinase C-like 1B; | |
P35129 (UBC2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Ubiquitin-conjugating enzyme E2 2; E2 ubiquitin-conjugating enzyme 2; Lethal protein 70; Ubiquitin carrier protein 2; Ubiquitin-protein ligase 2; | |
P34313 (BUD31_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein BUD31 homolog; Protein G10 homolog; | |
Q20561 (HLH13_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Helix-loop-helix protein 13; Fer3-like protein; Nephew of atonal 3; | |
G5EE01 (PTEN_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase daf-18; Abnormal dauer formation protein 18; | |
P56407 (HM09_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Homeobox protein ceh-9; | |
Q10129 (RT16_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Small ribosomal subunit protein bS16m; 28S ribosomal protein S16, mitochondrial; | |
P48162 (R23A1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Large ribosomal subunit protein uL23A; 60S ribosomal protein L23a 1; | |
P34427 (LIN36_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein lin-36; Abnormal cell lineage protein 36; | |
Q17632 (RRP44_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable exosome complex exonuclease RRP44; Protein DIS3 homolog; Ribosomal RNA-processing protein 44; | |
G5EDT1 (LIN35_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Retinoblastoma-like protein homolog lin-35; Abnormal cell lineage protein 35; Synthetic multivulva protein lin-35; | |
P91167 (ARPC5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable actin-related protein 2/3 complex subunit 5; Arp2/3 complex 16 kDa subunit; | |
P34557 (YNP4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein T05G5.4; | |
Q09242 (BCL7_CAEEL) | Swiss-Prot | Caenorhabditis elegans | BCL7-like protein; | |
P90897 (RDE12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | DEAD-box ATP-dependent RNA helicase rde-12; RNA interference defective protein 12; | |
Q20647 (R23A2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Large ribosomal subunit protein uL23B; 60S ribosomal protein L23a 2; |
Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments. The name means "elegant new rod".
C. elegans is a model organism for nervous system development as well as senescence. Of interest to researchers is the phenomenon of eutely: each adult hermaphrodite has exactly 959 and each adult male exactly 1031 somatic cell nuclei
C. elegans was the first multicellular organism to have its whole genome sequenced in 1998.
From left to right: i) The number of proteins in the reference proteome of Caenorhabditis elegans, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caenorhabditis elegans for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caenorhabditis elegans, please visit UniProtKB.
You can easily download the latest protein sequences for Caenorhabditis elegans proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_01 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
19,827 | 12,744 | 22,978 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caenorhabditis elegans reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caenorhabditis elegans proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 12-mer | 14-mer | 16-mer | 20-mer | 24-mer | 26-mer | 32-mer | 34-mer | 40-mer | 41-mer | 44-mer | 48-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20,229 | 1,853 | 163 | 373 | 103 | 98 | 8 | 36 | 9 | 13 | 38 | 5 | 8 | 4 | 10 | 1 | 6 | 1 | 9 | 3 | 2 | 1 | 2 | 2 | 1 |