P03356 (POL_MLVAV) AKV murine leukemia virus (AKR (endogenous) murine leukemia virus)

Gag-Pol polyprotein UniProtKBInterproInteractive Modelling

1734 aa; Sequence (Fasta)

Sequence Features

 565Protease; shared with dimeric partner.
 808Magnesium; catalytic; for reverse transcriptase activity.
 882Magnesium; catalytic; for reverse transcriptase activity.
 883Magnesium; catalytic; for reverse transcriptase activity.
 1182Magnesium; catalytic; for RNase H activity.
 1220Magnesium; catalytic; for RNase H activity.
 1241Magnesium; catalytic; for RNase H activity.
 1311Magnesium.
 1454Magnesium; catalytic; for integrase activity.
 1513Magnesium; catalytic; for integrase activity.
 501-518CCHC-type.
 1386-1426HHCC-type.
 129-130Cleavage; by viral protease.
 214-215Cleavage; by viral protease.
 477-478Cleavage; by viral protease.
 533-534Cleavage; by viral protease.
 658-659Cleavage; by viral protease.
 1329-1330Cleavage; by viral protease.
 2-127Gamma-retroviral matrix protein
IPR000840PF01140
 130-214Gag polyprotein, inner coat protein p12
IPR002079PF01141
 225-432Core shell protein Gag P30
IPR003036PF02093
 502-518Zinc finger, CCHC-type
IPR001878PF00098
 548-639Retropepsins
IPR018061PF00077
 759-929Reverse transcriptase domain
IPR000477PF00078
 1176-1318Ribonuclease H domain
IPR002156PF00075
 1340-1438Gag-Pol polyprotein, Zinc-finger like do main
IPR039464PF16721
 1445-1557Integrase, catalytic core
IPR001584PF00665

Sequence Alignments

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownload
monomer -2.273oyi.1.B1442-1632
32.74
monomer ZN;-2.273s3o.1.A1362-1710
26.73
monomer -2.405dmq.1.A682-1321
95.99
monomer -3.985hp1.1.B701-1088
19.68
monomer -4.782ynf.1.A702-1320
21.85
monomer -5.001rt3.1.B703-1121
18.72