- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 5 x NA: SODIUM ION(Non-functional Binders)
NA.2: 4 residues within 4Å:- Chain A: N.30, D.115, F.174
- Ligands: ITT.6
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.30
- Water bridges: A:N.30, A:D.115
NA.3: 5 residues within 4Å:- Chain A: I.103, Y.104, S.105, A.106
- Ligands: ITT.6
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.105, A:A.106
- Water bridges: A:E.61, A:S.90, A:I.103, A:I.103, A:Y.104
NA.4: 6 residues within 4Å:- Chain A: E.36, K.197, S.198, S.201, R.203, G.204
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.36, A:S.201, A:G.204
NA.8: 5 residues within 4Å:- Chain B: N.30, D.115, F.174
- Ligands: NA.9, ITT.10
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.30
NA.9: 5 residues within 4Å:- Chain B: D.115, N.118, Y.176
- Ligands: NA.8, ITT.10
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.118
- 1 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ITT: INOSINE 5'-TRIPHOSPHATE(Non-covalent)
ITT.6: 23 residues within 4Å:- Chain A: T.28, G.29, N.30, K.33, E.61, K.73, D.88, A.89, S.90, G.91, S.105, A.106, F.138, F.174, G.175, Y.176, D.177, K.197, H.202, R.203
- Ligands: CA.1, NA.2, NA.3
21 PLIP interactions:21 interactions with chain A- Hydrogen bonds: A:G.29, A:N.30, A:D.88, A:S.90, A:S.90, A:S.105, A:D.115, A:Y.176, A:K.197, A:H.202, A:R.203, A:R.203
- Water bridges: A:S.58, A:D.115, A:N.118
- Salt bridges: A:K.33, A:K.33, A:K.33, A:K.73, A:K.73, A:K.73
ITT.10: 23 residues within 4Å:- Chain B: T.28, G.29, N.30, K.33, E.61, K.73, D.88, A.89, S.90, G.91, S.105, A.106, F.138, F.174, G.175, Y.176, D.177, K.197, H.202, R.203
- Ligands: CA.7, NA.8, NA.9
23 PLIP interactions:23 interactions with chain B- Hydrogen bonds: B:T.28, B:G.29, B:N.30, B:N.30, B:D.88, B:S.90, B:S.90, B:S.105, B:D.115, B:Y.176, B:K.197, B:H.202, B:R.203, B:R.203
- Water bridges: B:K.73, B:K.73, B:A.106
- Salt bridges: B:K.33, B:K.33, B:K.33, B:K.73, B:K.73, B:K.73
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Savchenko, A. et al., Molecular basis of the antimutagenic activity of the house-cleaning inosine triphosphate pyrophosphatase RdgB from Escherichia coli. J.Mol.Biol. (2007)
- Release Date
- 2008-02-19
- Peptides
- HAM1 protein homolog: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 5 x NA: SODIUM ION(Non-functional Binders)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ITT: INOSINE 5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Savchenko, A. et al., Molecular basis of the antimutagenic activity of the house-cleaning inosine triphosphate pyrophosphatase RdgB from Escherichia coli. J.Mol.Biol. (2007)
- Release Date
- 2008-02-19
- Peptides
- HAM1 protein homolog: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B