SMTL ID : 3bkz.1

X-ray structure of E coli AlkB crosslinked to dsDNA in the active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.118, D.120, H.174, R.197 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.118, A:D.120, A:H.174, H2O.1

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 15 residues within 4Å: Chain A: L.105, N.107, Y.109, L.115, H.118, D.120, S.132, H.174, I.176, R.191, N.193, T.195, R.197 Chain B: X.8 Ligands: MN.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.115, A:I.176 Hydrogen bonds: A:N.107, A:S.132, A:S.132, A:T.195 Water bridges: A:N.193, A:R.197, A:R.197 Salt bridges: A:H.118, A:R.191, A:R.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, C.-G. et al., Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature (2008)

Release Date

2008-04-22

Peptides

Alpha-ketoglutarate-dependent dioxygenase alkB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase alkB