SMTL ID : 3iyw.2 (3 other biounits)

West Nile virus in complex with Fab fragments of MAb CR4354 (fitted coordinates of envelope proteins and Fab fragments of one icosahedral ASU)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-15-10-10-mer

Ligands

15 x NDG- NDG- FUL: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-glucopyranose

NDG-NDG-FUL.1: 4 residues within 4Å: Chain A: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.2: 4 residues within 4Å: Chain B: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.3: 4 residues within 4Å: Chain C: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.4: 4 residues within 4Å: Chain H: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.5: 4 residues within 4Å: Chain I: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.6: 4 residues within 4Å: Chain J: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.7: 4 residues within 4Å: Chain O: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.8: 4 residues within 4Å: Chain P: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.9: 4 residues within 4Å: Chain Q: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.10: 4 residues within 4Å: Chain V: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.11: 4 residues within 4Å: Chain W: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.12: 4 residues within 4Å: Chain X: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.13: 4 residues within 4Å: Chain 2: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.14: 4 residues within 4Å: Chain 3: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP) NDG-NDG-FUL.15: 4 residues within 4Å: Chain 4: E.150, N.154, S.156, T.157 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaufmann, B. et al., Neutralization of West Nile virus by cross-linking of its surface proteins with Fab fragments of the human monoclonal antibody CR4354. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-11-24

Peptides

Envelope glycoprotein: ABCHIJOPQVWX234
CR4354 Fab fragment X1, heavy chain H: DFKMRTY057
CR4354 Fab fragment X1, light chain L: EGLNSUZ168

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

H
A

I
B

J
C

O
A

P
B

Q
C

V
A

W
B

X
C

2
A

3
B

4
C

D
H

F
K

K
H

M
K

R
H

T
K

Y
H

0
K

5
H

7
K

E
L

G
M

L
L

N
M

S
L

U
M

Z
L

1
M

6
L

8
M

Envelope glycoprotein

CR4354 Fab fragment X1, heavy chain H

CR4354 Fab fragment X1, light chain L

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