- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: H.341, K.342, H.360
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.342
- Salt bridges: A:H.341, A:K.342, A:H.360
SO4.10: 4 residues within 4Å:- Chain A: S.335, L.336, R.339
- Chain E: K.231
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: A:S.335, A:L.336
- Salt bridges: A:R.339, E:K.231
SO4.12: 5 residues within 4Å:- Chain B: K.222, R.225, S.261, P.262, V.263
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.261, B:V.263
- Salt bridges: B:K.222, B:R.225
SO4.15: 3 residues within 4Å:- Chain E: H.341, K.342, H.360
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:K.342
- Salt bridges: E:H.341, E:K.342, E:H.360
SO4.23: 4 residues within 4Å:- Chain A: K.231
- Chain E: S.335, L.336, R.339
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:S.335, E:L.336
- Salt bridges: E:R.339, A:K.231
SO4.25: 5 residues within 4Å:- Chain F: K.222, R.225, S.261, P.262, V.263
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:S.261, F:V.263
- Salt bridges: F:K.222, F:R.225
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 3 residues within 4Å:- Chain A: S.165, T.166, S.167
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.166, A:T.166, A:S.167, A:S.167
GOL.4: 4 residues within 4Å:- Chain A: P.138, S.139, Q.140, K.244
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.140, A:Q.140
GOL.5: 5 residues within 4Å:- Chain A: L.295, Q.299
- Chain B: Y.266, Q.270, D.276
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.270, B:D.276
GOL.6: 5 residues within 4Å:- Chain A: Q.63, L.82, Y.83
- Chain E: P.280, F.281
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: A:Q.63, A:Y.83, E:F.281
GOL.16: 3 residues within 4Å:- Chain E: S.165, T.166, S.167
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:T.166, E:S.167, E:S.167
GOL.17: 4 residues within 4Å:- Chain E: P.138, S.139, Q.140, K.244
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:Q.140, E:Q.140
GOL.18: 5 residues within 4Å:- Chain E: L.295, Q.299
- Chain F: Y.266, Q.270, D.276
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:Q.270, F:D.276
GOL.19: 5 residues within 4Å:- Chain A: P.280, F.281
- Chain E: Q.63, L.82, Y.83
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:Q.63, E:Y.83, E:Y.83, A:F.281
- 2 x NH4: AMMONIUM ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.8: 4 residues within 4Å:- Chain A: D.131, D.188
- Ligands: MG.9, DLU.11
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.131, A:D.188, H2O.4, H2O.4
MG.9: 5 residues within 4Å:- Chain A: D.131, E.224, H.227
- Ligands: MG.8, DLU.11
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.131, A:E.224, A:E.224, H2O.4
MG.21: 4 residues within 4Å:- Chain E: D.131, D.188
- Ligands: MG.22, DLU.24
4 PLIP interactions:2 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:D.131, E:D.188, H2O.12, H2O.12
MG.22: 5 residues within 4Å:- Chain E: D.131, E.224, H.227
- Ligands: MG.21, DLU.24
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.131, E:E.224, E:E.224, H2O.12
- 2 x DLU: (4R,12aS)-N-(2,4-difluorobenzyl)-7-hydroxy-4-methyl-6,8-dioxo-3,4,6,8,12,12a-hexahydro-2H-pyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazine-9-carboxamide(Non-covalent)
DLU.11: 12 residues within 4Å:- Chain A: D.131, D.188, Y.215, P.217, Q.218, E.224, R.332
- Chain C: G.4
- Chain D: C.16, A.17
- Ligands: MG.8, MG.9
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:P.217, A:P.217
DLU.24: 12 residues within 4Å:- Chain E: D.131, D.188, Y.215, P.217, Q.218, E.224, R.332
- Chain G: G.4
- Chain H: C.16, A.17
- Ligands: MG.21, MG.22
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:P.217, E:P.217
- 2 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
HEZ.13: 7 residues within 4Å:- Chain A: S.178
- Chain B: W.157, L.158, Y.159, Y.246, P.250, Q.253
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:Y.159
- Hydrogen bonds: B:L.158, B:Y.246, B:Q.253, B:Q.253
HEZ.26: 7 residues within 4Å:- Chain E: S.178
- Chain F: W.157, L.158, Y.159, Y.246, P.250, Q.253
5 PLIP interactions:5 interactions with chain F- Hydrophobic interactions: F:Y.159
- Hydrogen bonds: F:L.158, F:Y.246, F:Q.253, F:Q.253
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hare, S. et al., Structural and Functional Analyses of the Second-Generation Integrase Strand Transfer Inhibitor Dolutegravir (S/GSK1349572). Mol.Pharmacol. (2011)
- Release Date
- 2011-07-13
- Peptides
- PFV integrase: ABEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 2 x NH4: AMMONIUM ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x DLU: (4R,12aS)-N-(2,4-difluorobenzyl)-7-hydroxy-4-methyl-6,8-dioxo-3,4,6,8,12,12a-hexahydro-2H-pyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazine-9-carboxamide(Non-covalent)
- 2 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hare, S. et al., Structural and Functional Analyses of the Second-Generation Integrase Strand Transfer Inhibitor Dolutegravir (S/GSK1349572). Mol.Pharmacol. (2011)
- Release Date
- 2011-07-13
- Peptides
- PFV integrase: ABEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
B