SMTL ID : 4a8n.1

Protein crystallization and microgravity: glucose isomerase crystals grown during the PCDF-PROTEIN mission

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-tetramer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: D.24, Y.254, D.255, Q.256 Chain B: P.25 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.256 Water bridges: A:D.24, B:P.25, B:P.187 GOL.2: 7 residues within 4Å: Chain A: H.54, F.94, W.137, E.181, D.245, D.287 Ligands: CO.3 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.90, A:T.91, A:N.215 GOL.5: 5 residues within 4Å: Chain A: P.25 Chain B: D.24, Y.254, D.255, Q.256 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Water bridges: A:P.25, A:P.187, B:Y.254 Hydrogen bonds: B:Q.256 GOL.6: 7 residues within 4Å: Chain B: H.54, F.94, W.137, E.181, D.245, D.287 Ligands: CO.7 3 PLIP interactions: 3 interactions with chain B Water bridges: B:T.90, B:T.91, B:N.215 GOL.9: 5 residues within 4Å: Chain C: D.24, Y.254, D.255, Q.256 Chain D: P.25 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:Q.256 Water bridges: C:Y.254, D:P.25, D:P.187 GOL.10: 7 residues within 4Å: Chain C: H.54, F.94, W.137, E.181, D.245, D.287 Ligands: CO.11 3 PLIP interactions: 3 interactions with chain C Water bridges: C:T.90, C:T.91, C:N.215 GOL.13: 5 residues within 4Å: Chain C: P.25 Chain D: D.24, Y.254, D.255, Q.256 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Water bridges: C:P.25, C:P.187, D:D.24 Hydrogen bonds: D:Q.256 GOL.14: 7 residues within 4Å: Chain D: H.54, F.94, W.137, E.181, D.245, D.287 Ligands: CO.15 3 PLIP interactions: 3 interactions with chain D Water bridges: D:T.90, D:T.91, D:N.215

8 x CO: COBALT (II) ION(Non-covalent)

CO.3: 5 residues within 4Å: Chain A: E.181, E.217, D.245, D.287 Ligands: GOL.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.181, A:E.217, A:D.245, A:D.287, H2O.10 CO.4: 5 residues within 4Å: Chain A: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.217, A:H.220, A:D.255, A:D.257, H2O.11 CO.7: 5 residues within 4Å: Chain B: E.181, E.217, D.245, D.287 Ligands: GOL.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.181, B:E.217, B:D.245, B:D.287, H2O.28 CO.8: 5 residues within 4Å: Chain B: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.217, B:H.220, B:D.255, B:D.257, H2O.28 CO.11: 5 residues within 4Å: Chain C: E.181, E.217, D.245, D.287 Ligands: GOL.10 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.181, C:E.217, C:D.245, C:D.287, H2O.45 CO.12: 5 residues within 4Å: Chain C: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.217, C:H.220, C:D.255, C:D.257, H2O.46 CO.15: 5 residues within 4Å: Chain D: E.181, E.217, D.245, D.287 Ligands: GOL.14 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.181, D:E.217, D:D.245, D:D.287, H2O.62 CO.16: 5 residues within 4Å: Chain D: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.217, D:H.220, D:D.255, D:D.257, H2O.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Decanniere, K. et al., Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission. To be Published

Release Date

2012-02-29

Peptides

XYLOSE ISOMERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

XYLOSE ISOMERASE

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