SMTL ID : 6gq2.1

Crystal Structure of the PSMalpha3 Peptide Mutant K12A Forming Cross-Alpha Amyloid-like Fibril

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-18-mer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: F.3, K.6, L.7, F.10 Chain B: V.4, F.8 Ligand excluded by PLIP SO4.2: 6 residues within 4Å: Chain B: F.3, K.6, L.7, F.10 Chain C: V.4, F.8 Ligand excluded by PLIP SO4.3: 6 residues within 4Å: Chain C: F.3, K.6, L.7, F.10 Chain D: V.4, F.8 Ligand excluded by PLIP SO4.4: 6 residues within 4Å: Chain D: F.3, K.6, L.7, F.10 Chain E: V.4, F.8 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain E: F.3, K.6, L.7, F.10 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain A: V.4, F.8 Chain F: F.3, K.6, L.7, F.10 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain F: V.4, F.8 Chain G: F.3, K.6, L.7, F.10 Ligand excluded by PLIP SO4.8: 6 residues within 4Å: Chain G: V.4, F.8 Chain H: F.3, K.6, L.7, F.10 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain H: V.4, F.8 Chain I: F.3, K.6, L.7, F.10 Ligand excluded by PLIP SO4.10: 6 residues within 4Å: Chain J: F.3, K.6, L.7, F.10 Chain K: V.4, F.8 Ligand excluded by PLIP SO4.11: 6 residues within 4Å: Chain K: F.3, K.6, L.7, F.10 Chain L: V.4, F.8 Ligand excluded by PLIP SO4.12: 6 residues within 4Å: Chain L: F.3, K.6, L.7, F.10 Chain M: V.4, F.8 Ligand excluded by PLIP SO4.13: 6 residues within 4Å: Chain M: F.3, K.6, L.7, F.10 Chain N: V.4, F.8 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain N: F.3, K.6, L.7, F.10 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain J: V.4, F.8 Chain O: F.3, K.6, L.7, F.10 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain O: V.4, F.8 Chain P: F.3, K.6, L.7, F.10 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain P: V.4, F.8 Chain Q: F.3, K.6, L.7, F.10 Ligand excluded by PLIP SO4.18: 6 residues within 4Å: Chain Q: V.4, F.8 Chain R: F.3, K.6, L.7, F.10 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tayeb-Fligelman, E. et al., Staphylococcus aureus PSM alpha 3 Cross-alpha Fibril Polymorphism and Determinants of Cytotoxicity. Structure (2020)

Release Date

2019-06-19

Peptides

Phenol-soluble modulin alpha 3 peptide: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

Phenol-soluble modulin alpha 3 peptide