SMTL ID : 6wu2.1

Structure of the LaINDY-malate complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

6 x HEX: HEXANE(Non-covalent)(Non-functional Binders)

HEX.1: 12 residues within 4Å: Chain A: F.40, P.43, L.44, G.47, I.48, W.51, I.71, A.74, T.75, L.92, G.93, V.96 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.44, A:A.74, A:L.92 HEX.2: 6 residues within 4Å: Chain A: Y.418, Y.421, F.422, W.488, F.492 Ligands: HEX.5 No protein-ligand interaction detected (PLIP) HEX.5: 10 residues within 4Å: Chain A: V.73, I.76, V.77, I.80, Y.421, F.422, Y.468, W.488 Ligands: HEX.2, D10.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.488 HEX.6: 11 residues within 4Å: Chain B: F.72, V.73, I.76, V.77, I.80, Y.421, F.422, Y.468, W.488 Ligands: HEX.7, D10.8 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.422 HEX.7: 6 residues within 4Å: Chain B: Y.418, Y.421, F.422, W.488, F.492 Ligands: HEX.6 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.421 HEX.10: 13 residues within 4Å: Chain B: F.40, P.43, L.44, G.47, I.48, W.51, I.71, A.74, T.75, T.89, L.92, G.93, V.96 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.92

2 x D10: DECANE(Non-functional Binders)

D10.3: 8 residues within 4Å: Chain A: W.42, V.46, L.50, F.69, V.73, V.77, I.80 Ligands: HEX.5 No protein-ligand interaction detected (PLIP) D10.8: 8 residues within 4Å: Chain B: W.42, V.46, F.69, V.73, V.77, I.80, T.81 Ligands: HEX.6 No protein-ligand interaction detected (PLIP)

2 x OCT: N-OCTANE(Non-covalent)

OCT.4: 5 residues within 4Å: Chain A: L.324, I.333, Q.335, L.336 Chain B: L.99 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.99 OCT.9: 6 residues within 4Å: Chain A: L.99 Chain B: L.320, L.324, Q.335, L.336, L.344 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Q.335, A:L.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauer, D.B. et al., Structural basis for the reaction cycle of DASS dicarboxylate transporters. Elife (2020)

Release Date

2020-09-16

Peptides

DASS family sodium-coupled anion symporter: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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DASS family sodium-coupled anion symporter

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