- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-pentamer
- Ligands
- 5 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 5 x WK3: N-benzyl-2-(2,6-dimethylanilino)-N,N-diethyl-2-oxoethan-1-aminium(Non-covalent)
WK3.6: 15 residues within 4Å:- Chain A: H.37, E.39, Y.58, L.59, I.60, F.107, W.120, K.121, S.122, I.165
- Chain E: Y.95, Y.96, E.98, Y.148, E.188
15 PLIP interactions:14 interactions with chain A, 1 interactions with chain E- Hydrophobic interactions: A:E.39, A:Y.58, A:Y.58, A:I.60, A:W.120, A:W.120, A:I.165, E:Y.95
- Hydrogen bonds: A:E.39
- Salt bridges: A:E.39
- pi-Stacking: A:H.37, A:F.107, A:W.120
- pi-Cation interactions: A:Y.58, A:W.120
WK3.7: 15 residues within 4Å:- Chain A: Y.95, E.98, Y.148, E.188
- Chain B: H.37, L.38, E.39, Y.58, L.59, I.60, F.107, W.120, K.121, S.122, I.165
15 PLIP interactions:14 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:E.39, B:Y.58, B:Y.58, B:I.60, B:W.120, B:W.120, B:I.165, A:Y.95
- Hydrogen bonds: B:E.39
- Salt bridges: B:E.39
- pi-Stacking: B:H.37, B:F.107, B:W.120
- pi-Cation interactions: B:Y.58, B:W.120
WK3.8: 15 residues within 4Å:- Chain B: Y.95, E.98, Y.148, E.188
- Chain C: H.37, L.38, E.39, Y.58, L.59, I.60, F.107, W.120, K.121, S.122, I.165
15 PLIP interactions:1 interactions with chain B, 14 interactions with chain C- Hydrophobic interactions: B:Y.95, C:E.39, C:Y.58, C:Y.58, C:I.60, C:W.120, C:W.120, C:I.165
- Hydrogen bonds: C:E.39
- Salt bridges: C:E.39
- pi-Stacking: C:H.37, C:F.107, C:W.120
- pi-Cation interactions: C:Y.58, C:W.120
WK3.9: 15 residues within 4Å:- Chain C: Y.95, E.98, Y.148, E.188
- Chain D: H.37, L.38, E.39, Y.58, L.59, I.60, F.107, W.120, K.121, S.122, I.165
16 PLIP interactions:15 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:E.39, D:Y.58, D:Y.58, D:I.60, D:W.120, D:W.120, D:W.120, D:W.120, D:I.165, C:Y.95
- Hydrogen bonds: D:E.39
- Salt bridges: D:E.39
- pi-Stacking: D:H.37, D:F.107
- pi-Cation interactions: D:Y.58, D:W.120
WK3.10: 15 residues within 4Å:- Chain D: Y.95, E.98, Y.148, E.188
- Chain E: H.37, L.38, E.39, Y.58, L.59, I.60, F.107, W.120, K.121, S.122, I.165
13 PLIP interactions:12 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:E.39, E:Y.58, E:I.60, E:W.120, E:W.120, E:I.165, D:Y.95
- Hydrogen bonds: E:E.39
- pi-Stacking: E:H.37, E:F.107, E:W.120
- pi-Cation interactions: E:Y.58, E:W.120
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kang, G. et al., Sensory specializations drive octopus and squid behaviour. Nature (2023)
- Release Date
- 2023-04-12
- Peptides
- Squid sensory receptor CRB1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-pentamer
- Ligands
- 5 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 5 x WK3: N-benzyl-2-(2,6-dimethylanilino)-N,N-diethyl-2-oxoethan-1-aminium(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kang, G. et al., Sensory specializations drive octopus and squid behaviour. Nature (2023)
- Release Date
- 2023-04-12
- Peptides
- Squid sensory receptor CRB1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.